Question: How to download dbGaP CF Genotype-Tissue Expression Project (GTEx) data set
1
gravatar for haohanw
2.9 years ago by
haohanw60
United States
haohanw60 wrote:

Hi,

How should I download the dbGaP CF Genotype-Tissue Expression Project (GTEx)  data set, it looks a very interesting data sets contains a variety of phenotypes and tissue attributes.

I am looking forward to do research on it, but I could not figure how to download it in the first place. Could someone please help me?

getx database latest • 2.7k views
ADD COMMENTlink modified 2.9 years ago by Lemire/OICR370 • written 2.9 years ago by haohanw60
2
gravatar for Lemire/OICR
2.9 years ago by
Lemire/OICR370
Canada
Lemire/OICR370 wrote:

From your link, click the "Study" tab, Jump to "Authorized Access" and follow the "Data access provided by:" link. You will be redirected to the following page, that has all instructions on how and who can apply:

 https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?page=login

 

ADD COMMENTlink written 2.9 years ago by Lemire/OICR370
1
gravatar for Sean Davis
2.9 years ago by
Sean Davis25k
National Institutes of Health, Bethesda, MD
Sean Davis25k wrote:

The details for that project are here:

http://www.gtexportal.org/home/

If you want access to controlled-access data (genotypes, reads/bam files), then you will need to formally request access through dbGaP.

ADD COMMENTlink written 2.9 years ago by Sean Davis25k

Thanks. I guess the problem I met is mainly about I could not figure out how to formally request access, should I request through dbGaP's website or gtexportal main page? 

ADD REPLYlink written 2.9 years ago by haohanw60
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