Tool: The release of HaploMeger2: building reference and alterantive haploid assemblies for polymorphic diploid genomes
gravatar for mapleforest
4.4 years ago by
mapleforest10 wrote:

Dear all, I would like to introduce you to the new HaploMerger2 package.

Now it comes with a new and more advanced pipeline which can:
0. be easier to use;
1. reconstruct the allelic relationships within a diploid assembly;
2. detect and correct mis-joins in a diploid assembly;
3. reconstruct two haploid assemblies for the diploid assembly: the reference and the alternative haploid assemblies;
4. further scaffold a haploid assembly (by using third-party software) to restore or even achieve better continuity;
5. detect and remove tandem mis-assemblies from haploid assemblies;
6. finish N-gaps in haploid assemblies (by using third-party software) to achieve better contiguity;
7. Many new features, improved quality and bug fixing.

Please feel free to try.
Download site:




tool assembly • 1.6k views
ADD COMMENTlink modified 4.4 years ago • written 4.4 years ago by mapleforest10
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