Hi, everyone,
I am using BLAST+ to identify homologous genes. I would like to know the default parameters of BLASTN. When typing blastn -h
orblastn -help
, I could not find detailed default values. On blast+_user_manual.pdf downloaded from NCBI, I could not find these default settings. Could you please do me a favor? I am particularly concern about word_size, penalty score settings, repeat filter, etc. THANK YOU very much!
Thank you a.zielezinski. Your information is useful.