running CD-hit from python scripts
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5.9 years ago
Moses ▴ 120

Hi all,

I was wondering How I can run CD-hit program from my python script. Can anybody show me steps of how and where to install CD-hit and how to run it from my python scripts by calling it as a function and passing parameters to it through the code. 

I am using python 2.7, and will try to set it up on a linux server. I dont have a root access to it however I have my own directory and can modify my own bashrc file.

Thank you.

python2.7 CD-hit • 3.4k views
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5.9 years ago
h.mon 33k

To install cd-hit, download it from here and follow the instructions on the README file. To call cd-hit using python, see here.

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