Question: running CD-hit from python scripts
gravatar for mossigstamboulian
2.8 years ago by
united states/ Bloomingtion/ Indiana University Bloomington
mossigstamboulian30 wrote:

Hi all,

I was wondering How I can run CD-hit program from my python script. Can anybody show me steps of how and where to install CD-hit and how to run it from my python scripts by calling it as a function and passing parameters to it through the code. 

I am using python 2.7, and will try to set it up on a linux server. I dont have a root access to it however I have my own directory and can modify my own bashrc file.

Thank you.

cd-hit python2.7 • 1.1k views
ADD COMMENTlink modified 2.8 years ago by h.mon18k • written 2.8 years ago by mossigstamboulian30
gravatar for h.mon
2.8 years ago by
h.mon18k wrote:

To install cd-hit, download it from here and follow the instructions on the README file. To call cd-hit using python, see here.

ADD COMMENTlink written 2.8 years ago by h.mon18k
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