Question: running CD-hit from python scripts
gravatar for mossigstamboulian
3.0 years ago by
united states/ Bloomingtion/ Indiana University Bloomington
mossigstamboulian30 wrote:

Hi all,

I was wondering How I can run CD-hit program from my python script. Can anybody show me steps of how and where to install CD-hit and how to run it from my python scripts by calling it as a function and passing parameters to it through the code. 

I am using python 2.7, and will try to set it up on a linux server. I dont have a root access to it however I have my own directory and can modify my own bashrc file.

Thank you.

cd-hit python2.7 • 1.3k views
ADD COMMENTlink modified 3.0 years ago by h.mon21k • written 3.0 years ago by mossigstamboulian30
gravatar for h.mon
3.0 years ago by
h.mon21k wrote:

To install cd-hit, download it from here and follow the instructions on the README file. To call cd-hit using python, see here.

ADD COMMENTlink written 3.0 years ago by h.mon21k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1879 users visited in the last hour