I have a gene list that I want to deem "special" or "unspecial". What typically is done (to my understanding) for this is a gene annotation analysis (like DAVID). My question is how are these analyses:
1. automated, so results are visualized dynamically, instead of via manual entry for each gene list on the DAVID website, etc.
2. visualized in a compelling way (are there just tables with the annotation terms that are significant?)
3. done in R
So far, I have discovered clusterProfiler, but its enrichDAVID() method seems to be deprecated, and I only have official gene symbols, not ENTREZ gene ids. I'm hoping someone has a working (and maintained) way to do these analyses in R.
Thanks for any help!