Question: Where to download earlier versions of GWAS Catalog?
gravatar for epigene
5.3 years ago by
United States
epigene490 wrote:

GWAS Catalog has moved to EMBL and currently the version on EMBL site has:


Catalog stats

  • Last data release on 2015-11-19
  • 2326 studies
  • 15020 SNPs
  • 16831 SNP-trait associations
  • Genome assembly GRCh38.p2
  • dbSNP Build 144

I want to download an earlier versions with dbSNP build 142, where can I download it? 

I'm also curious what version of dbSNP do they use at a particular time.. it seems to be a non-trivial thing to change SNP coordinates between different genome assembly and different dbSNP builds.. curious about how they do it.



gwas • 1.7k views
ADD COMMENTlink modified 4.5 years ago by Biostar ♦♦ 20 • written 5.3 years ago by epigene490

On the Downloading the GWAS catalog page, they point to their FTP for older versions. However they don't seem to be as old as you'd have liked. Perhaps it's worth sending them an email?

ADD REPLYlink modified 4.5 years ago • written 4.5 years ago by Denise CS5.1k

yeah, thanks for the comment!

ADD REPLYlink written 4.5 years ago by epigene490
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