Question: Generating Gencode TSS file
3
gravatar for dally
4.0 years ago by
dally180
United States
dally180 wrote:

I'm interested in obtaining a bed file of TSS from Gencode v19. I had previously built one for RefSeq TSS that had approximately 30k TSS. But I seem to be getting over 100k+ TSS for Gencode using UCSC. Why is this? Is gencode giving me a TSS for every isoforms? 

How can I generate a TSS file using the Gencode annotation?

tss gencode • 3.0k views
ADD COMMENTlink modified 4.0 years ago by Biostar ♦♦ 20 • written 4.0 years ago by dally180
2

the README file from Genocode TSSs explains how they were created and you can download the file from there

ADD REPLYlink written 4.0 years ago by TriS4.0k
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