Question: Generating Gencode TSS file
3
gravatar for dally
4.4 years ago by
dally190
United States
dally190 wrote:

I'm interested in obtaining a bed file of TSS from Gencode v19. I had previously built one for RefSeq TSS that had approximately 30k TSS. But I seem to be getting over 100k+ TSS for Gencode using UCSC. Why is this? Is gencode giving me a TSS for every isoforms? 

How can I generate a TSS file using the Gencode annotation?

tss gencode • 3.2k views
ADD COMMENTlink modified 4.3 years ago by Biostar ♦♦ 20 • written 4.4 years ago by dally190
2

the README file from Genocode TSSs explains how they were created and you can download the file from there

ADD REPLYlink modified 3 months ago by RamRS26k • written 4.3 years ago by TriS4.2k
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