Question: Generating Gencode TSS file
gravatar for dally
4.0 years ago by
United States
dally180 wrote:

I'm interested in obtaining a bed file of TSS from Gencode v19. I had previously built one for RefSeq TSS that had approximately 30k TSS. But I seem to be getting over 100k+ TSS for Gencode using UCSC. Why is this? Is gencode giving me a TSS for every isoforms? 

How can I generate a TSS file using the Gencode annotation?

tss gencode • 3.0k views
ADD COMMENTlink modified 4.0 years ago by Biostar ♦♦ 20 • written 4.0 years ago by dally180

the README file from Genocode TSSs explains how they were created and you can download the file from there

ADD REPLYlink written 4.0 years ago by TriS4.0k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1696 users visited in the last hour