short kmer or long kmer with SNP inside ?
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Entering edit mode
6.0 years ago

I'd like to seek for SNP that are close to each other.

I think I can use a small kmer size like 11 or use longer kmer (k=51) but add the -P=4 option. I'm not sure to well understand the differences. Can you help me ?

-> I'm working on complex genome (plant with lot of duplications)

 

discosnp parameters • 1.3k views
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