How to create a Venn diagram to compare 3 vcf files?
I know that vcftools vcf-compare can give the overlap of variants between 2 vcf files
vcf-compare sample1.flt.vcf.gz sample2.flt.vcf.gz > venn.out
Is there any possibility to compare vcf files ( 1, 2 and their union vcf files) from mpileup?
I really appreciate any help
-m is not work in vcf-compare option, see below: