I am working on computational method to find out target mRNA for some selected miRNA. In NCBI I found expression matrix to do my job. Finally using MiRTarBase to validate my computational result.
In MiRTarBase there is miRNA like, hsa-miR-200a
and its target gene like VIM
, CHD9
etc.
But, in the expression data from NCBI, the miRNA are represented by an ID like, 3980
, 9938
etc.
The mRNA from NCBI are represented by ID like, AFFX-BioB-M_at
, AFFX-BioB-M-3_at
, etc.
I can see that the ID reference from the two sources for miRNA and mRNA are different. How can I match an ID from NCBI to an ID with MiRTarBase / TarBase? If I have any misconception please clarify