Question

Pipeline for RNA-seq analysis

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9.8 years ago

Chenglin ▴ 260

Dear all,

Happy New Year!

I am going to analyze RNA-Seq data. Does anyone would like to share the pipeline for RNA-Seq analysis? I will appreciate it very much. Thank you!

rna-seq • 3.8k views

ADD COMMENT • link updated 3.3 years ago by Ram 45k • written 9.8 years ago by Chenglin ▴ 260

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hi,

have you seen this - Rna-Seq Pipeline

ADD REPLY • link updated 5.9 years ago by Ram 45k • written 9.8 years ago by Amitm ★ 2.3k

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Thank you very much! I'll take a look.

ADD REPLY • link 9.8 years ago by Chenglin ▴ 260

Ram · Answer 1 · 2016-01-13

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9.8 years ago

GouthamAtla 12k

May be you should also look at Informatics of RNA-Seq.

ADD COMMENT • link updated 5.9 years ago by Ram 45k • written 9.8 years ago by GouthamAtla 12k

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Thank you very much!

ADD REPLY • link updated 5.9 years ago by Ram 45k • written 9.8 years ago by Chenglin ▴ 260

score 2 · Answer 2 · 2016-01-13

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9.8 years ago

h.mon 35k

Check "The simple fool's guide to population genomics via RNA-Seq", available here.

ADD COMMENT • link 9.8 years ago by h.mon 35k

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Thank you very much!

ADD REPLY • link 9.8 years ago by Chenglin ▴ 260

score 1 · Answer 3 · 2016-01-14

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9.8 years ago

Constantine ▴ 290

Here's a very detailed pipeline

ADD COMMENT • link 9.8 years ago by Constantine ▴ 290