Question: GC content of Refseq gene
1
gravatar for BIOTIN
4.4 years ago by
BIOTIN50
China
BIOTIN50 wrote:

Hi,

Is there any software/R package can retrieve GC content of Refseq gene?

Thank you,

 

 

 

next-gen • 1.3k views
ADD COMMENTlink modified 4.4 years ago by Sukhdeep Singh10k • written 4.4 years ago by BIOTIN50
3
gravatar for Sukhdeep Singh
4.4 years ago by
Netherlands
Sukhdeep Singh10k wrote:

Repitools has a function for calculating gcContent called as gcContentCalc

Minimal example from the package.

require(BSgenome.Hsapiens.UCSC.hg18)
TSSTable <- data.frame(chr = paste("chr", c(1,2), sep = ""), position = c(100000, 200000))
gcContentCalc(TSSTable, 200, organism=Hsapiens)
ADD COMMENTlink modified 5 months ago by RamRS27k • written 4.4 years ago by Sukhdeep Singh10k

Thank you,appreciate that!

ADD REPLYlink written 4.4 years ago by BIOTIN50
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