GC content of Refseq gene
1
1
Entering edit mode
8.9 years ago
BIOTIN ▴ 50

Hi,

Is there any software/R package can retrieve GC content of Refseq gene?

Thank you

next-gen • 2.1k views
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3
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8.9 years ago

Repitools has a function for calculating gcContent called as gcContentCalc

Minimal example from the package.

require(BSgenome.Hsapiens.UCSC.hg18)
TSSTable <- data.frame(chr = paste("chr", c(1,2), sep = ""), position = c(100000, 200000))
gcContentCalc(TSSTable, 200, organism=Hsapiens)
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Thank you,appreciate that!

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