GC content of Refseq gene
1
1
Entering edit mode
7.0 years ago
BIOTIN ▴ 50

Hi,

Is there any software/R package can retrieve GC content of Refseq gene?

Thank you

next-gen • 1.8k views
ADD COMMENT
3
Entering edit mode
7.0 years ago

Repitools has a function for calculating gcContent called as gcContentCalc

Minimal example from the package.

require(BSgenome.Hsapiens.UCSC.hg18)
TSSTable <- data.frame(chr = paste("chr", c(1,2), sep = ""), position = c(100000, 200000))
gcContentCalc(TSSTable, 200, organism=Hsapiens)
ADD COMMENT
0
Entering edit mode

Thank you,appreciate that!

ADD REPLY

Login before adding your answer.

Traffic: 1019 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6