Question: Evolutionary Phylogenetic tree
0
gravatar for deepkumar1983
3.1 years ago by
United States
deepkumar198340 wrote:

Hi friends

I want to build a evolutionary phylogenetic tree. for this i am following this article "http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3514880/".

According to this, I have selected single gene orthologus family and use muscle for each family alignment and build tree with Phylip JTT model. Finally, tree from each cluster was used for make a supertree using phylip consenses program. Now, I have single unrooted tree. I want to make the tree with evolutionary time."http://www.nature.com/nbt/journal/v31/n2/fig_tab/nbt.2478_F4.html".

Any kind of help would be highly appreciated.

 

sequence alignment genome • 1.0k views
ADD COMMENTlink modified 3.1 years ago by moranr250 • written 3.1 years ago by deepkumar198340
1
gravatar for moranr
3.1 years ago by
moranr250
Ireland
moranr250 wrote:

Hi, 

For timing a tree have a look at BEAST (http://beast.bio.ed.ac.uk/) if you want to use a molecualr clock. 

Also, making a tree can be a more complex task than just getting a tree from any software.  Be cautious.  Have a look at this : http://www.mdpi.com/2079-3197/3/2/177

 

Best of luck. 

ADD COMMENTlink written 3.1 years ago by moranr250
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