I have a quick question.
I have found a paper describing the different assembly tools http://www.ncbi.nlm.nih.gov/pubmed/24581555 "A comprehensive evaluation of assembly scaffolding tools"
It turns out that they have test abyss-map v1.3.6 which turns out to be a bit old now.
My question is if you recommend to use abyss for metagenomics scaffolding. Right now i´m using megahit and soapdenovo , soapdenovo is not maintained any more so i´m looking for other open source options.
Do you recommend abyss for metagenomics (human microbioe, soil, water...).
Thanks for sharing your experience