How to create reference set of highly expressed genes for CAI. default its E.coli, My genome is Chlamydia trachomatis so i have to create reference set for performing some analysis Fop, CAI, CBI etc.
can anyone guide me how to create the highly expressed reference set and to give put these file.
They have asked to select menu 3-- ie "change defaults settings" but i am not able to change..
and need help to interpret the values and make meaning full charts.
I am using offline codonW 1.4, in windows platform