Question: Encoding zero-length features in BED format
0
gravatar for Daniel Standage
3.4 years ago by
Daniel Standage3.9k
Davis, California, USA
Daniel Standage3.9k wrote:

What is the convention for encoding zero-length features (that is, features between two nucleotides) in BED format? Would I use [0, 0) or [1, 1) to describe the site between the 0th base and 1st base?

coordinates bed genome • 961 views
ADD COMMENTlink modified 3.4 years ago by Chris Miller21k • written 3.4 years ago by Daniel Standage3.9k
4
gravatar for Chris Miller
3.4 years ago by
Chris Miller21k
Washington University in St. Louis, MO
Chris Miller21k wrote:

1,1 is the space between the 0th and 1st base in zero-based coordinates

0   1   2   3   4  zero-based coords
  A   C   T   G    bases
  1   2   3   4    one-based coords

   

ADD COMMENTlink modified 3.4 years ago • written 3.4 years ago by Chris Miller21k
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