Java api or library to calculate hydrogen bonds of a protein
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5.9 years ago
m.taheri ▴ 50

Hello every body.

I need a Java api or library for calculating hydrogen bonds of a given pdb file. Even a Web Service that calculates hydrogen bonds like this can be useful, because i need to call it from the program i am writing with Java.

Thanks a lot.

java hydrogen bond pdb protein • 1.4k views
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Entering edit mode
5.9 years ago
Dan D 7.2k

It will take a little bit of additional coding, but BioJava has a robust PDB Reader and plenty of classes for protein composition and structure. 

Classes/Interfaces of interest for this specific application:

Structure

PDBReader

FileParsingParameters

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