Question: Gene Ontology programatically given a list of gene IDs.
0
gravatar for moranr
3.9 years ago by
moranr260
Ireland
moranr260 wrote:

Hi, 

I am looking at some sequence similarity networks in Gephi.  I was wondering if someone could point me in the direction to establishing GO terms based on genes in the network and overlaying it on Gephi network ? 

Gene IDs are varying in type, as I have got them from a single source.  Many will have Ensembl IDs. 

Something command line and free is ideal. 

Thanks, 
R

go netwokrs gene ontology • 817 views
ADD COMMENTlink modified 3.9 years ago • written 3.9 years ago by moranr260
5
gravatar for cbio
3.9 years ago by
cbio430
cbio430 wrote:

clusterProfiler from R Bioconductor bitr function might have the ability to do this.

ADD COMMENTlink modified 3.9 years ago • written 3.9 years ago by cbio430
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