I have read through the related questions that popped up but I couldn't really find what I wanted. Here goes:
- I run a list of genes through KEGG(Using postForm() in R)
- I get a list of pathways back
- I select my pathways of interest(is there a way to do this in R?)
- I click on a pathway and get the graphics with the genes from my list in red
- How do I get these images in a text format?
- I'm trying to get neighboring genes/nodes to include in my gene list(is there a way to do this in R?)
I assume getting things in text is perhaps the first step, hence the initial question.