I am going to analyze whole genome sequence (WGS) data of Human sample. I need some clarifications on following terminologies.
- what is coverage and depth?
- I have seen people use WGS with expected coverage 30X. Why specifically 30X?
- How to see my WGS coverage information?
- Is there any
toolsto detect the coverage information?
- Does expected coverage changes for RNAseq and DNASeq?
- What is the relationship between SNP and coverage?