Question: SNP calling in non-model organism
1
gravatar for Janey
3.9 years ago by
Janey30
USA
Janey30 wrote:

hi I want to calling SNP in my RNAseq Data in my plant sample. my plant don't have reference genome. I de novo assembly my read. I want to use BWA and SAMTools softwares for SNP calling. Can anyone give me a good manual details for these two softwares?

snp • 1.6k views
ADD COMMENTlink modified 3.9 years ago by Emily_Ensembl20k • written 3.9 years ago by Janey30
3
gravatar for h.mon
3.9 years ago by
h.mon29k
Brazil
h.mon29k wrote:

See this SAMtools workflow, has all you asked for and more.

ADD COMMENTlink written 3.9 years ago by h.mon29k
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