MrBayes nexus file execute problem
0
0
Entering edit mode
8.2 years ago
Mehmet ▴ 820

Dear All: I have a alignment sequence file containing 12 species` multiple sequence. I mean each species has 113 different sequences. I did first alignment, then trimming. Finally, I want to run MrBayes for phylogeny. But I am getting the error below:

Could not find taxon HVUL in correct position in list of taxa
      Deleting previously defined characters
      Deleting previously defined taxa
      Error when setting parameter "MatrixInfo" (2)
      The error occurred when reading char. 1 on line 3408
         in the file 'readal.aa'
   Error in command "Execute"
  

this is how my nexus file looks like:

#NEXUS
BEGIN DATA;
 DIMENSIONS NTAX=1695 NCHAR=408;
FORMAT DATATYPE=PROTEIN INTERLEAVE=yes GAP=-;
[Name: RCUL    Len: 408]
[Name: CELE    Len: 408]
[Name: HBAC    Len: 408]
[Name: HVUL    Len: 408]
[Name: SKOW    Len: 408]
[Name: BGLA    Len: 408]


SKOW     LQFLQFLQ
TCAS     SCHNVVWN
LPOL     CELSCEQE

;
END;
sequence alignment next-gen • 4.0k views
ADD COMMENT

Login before adding your answer.

Traffic: 2507 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6