Question: MrBayes nexus file execute problem
0
gravatar for Mehmet
21 months ago by
Mehmet200
Japan
Mehmet200 wrote:

Dear All: I have a alignment sequence file containing 12 species` multiple sequence. I mean each species has 113 different sequences. I did first alignment, then trimming. Finally, I want to run MrBayes for phylogeny. But I am getting the error below:

Could not find taxon HVUL in correct position in list of taxa Deleting previously defined characters Deleting previously defined taxa Error when setting parameter "MatrixInfo" (2) The error occurred when reading char. 1 on line 3408 in the file 'readal.aa' Error in command "Execute"

this is how my nexus file looks like:

NEXUS

BEGIN DATA; DIMENSIONS NTAX=1695 NCHAR=408; FORMAT DATATYPE=PROTEIN INTERLEAVE=yes GAP=-; [Name: RCUL Len: 408] [Name: CELE Len: 408] [Name: HBAC Len: 408] [Name: HVUL Len: 408] [Name: SKOW Len: 408] [Name: BGLA Len: 408]

SKOW LQFLQFLQ TCAS SCHNVVWN LPOL CELSCEQE

; END;

alignment next-gen sequence • 870 views
ADD COMMENTlink written 21 months ago by Mehmet200
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