We sequenced the subsection of transcriptome and subsection of genome of our model plant using 454 pyrosequencing technology.
We were able to assemble both transcriptome and genome data.
However, i want to know 'is it good to combine them all to get a big assembly ?'.
I asked this is because 1) transcriptome data and genome data are different. 2) the 454 assembler -- Newbler treats genome and transcriptome data differently.