Hello. I'm relatively new to PyMol scripting features and I've come across a problem regarding image export.
python import time import os import csv def get_num(x): return float(''.join(ele for ele in x if ele.isdigit())) with open('combined1.csv') as csvfile: for entry in csvfile : print(entry) print("Fetching sequence..") cmd.fetch(entry[0:4]) time.sleep(3) outfile1 = str(entry+'.png') print("Plotting!") cmd.png(outfile1,ray=1) cmd.remove('all') print("New molecule!") python end
Using this code, I successfully manage to obtain sequences, yet images are not exported. What am I doing wrong? In my csv there are just names of pdb files.
Thanks for any help.