Hi!
I was given a list of human genes (about a 1,000) on which I need to perform the next assignments:
Look up the gene's sequences on geneCards (or some other server).
Take their sequences and first separate them into domainswith Pfam (http://pfam.xfam.org/search), Motifs (http://myhits.isb-sib.ch/cgi-bin/motif_scan).
Can someone please give me general directions on how or where to start from?
Thanks!
A good place to start would be the Biopython Cookbook and tutorial. The first part, getting the sequences, should be obvious if you check the Cookbook.