Question: gene list -interactions
0
gravatar for priyasethu18
4.7 years ago by
priyasethu180 wrote:

hello all! I have only the set of up regulated (1526)and down regulated (1950) gene list of bladder cancer in excel. I want to see the interaction between these genes, Is there any tool or software to do this?

tool gene • 1.1k views
ADD COMMENTlink modified 4.7 years ago • written 4.7 years ago by priyasethu180
0
gravatar for Zhilong Jia
4.7 years ago by
Zhilong Jia1.6k
London
Zhilong Jia1.6k wrote:

String can output the interactions based on your input.

ADD COMMENTlink written 4.7 years ago by Zhilong Jia1.6k
0
gravatar for Shamim Sarhadi
4.7 years ago by
IRAN
Shamim Sarhadi220 wrote:

Dear priyasethu18, you could use netanalyst

It has various options for statistical analysis and finding functional module in your gene list, also you could attribute a weight for each gene in your network

Best

ADD COMMENTlink written 4.7 years ago by Shamim Sarhadi220
0
gravatar for priyasethu18
4.7 years ago by
priyasethu180 wrote:

Thank you! i tried using STRING , since my gene list is large the , output is taking long to display.

ADD COMMENTlink written 4.7 years ago by priyasethu180
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