Need help in assigning COG categories

Question

[rajgg9]

Hi all,

I am new to this field. I would like to to assign COG categories to newly sequenced genome. I have amino acid data set. I have already setup the COGsoft, I don't know how to proceed.

I have gone through the readme file but still not able to run the COG. I would highly appreciate if some one help me in this regard ( steps from beginning to end).

Thanks
Raj Gaurab

Answer 1

[natasha.sernova]

There were several posts and sites about it:

Genome Wide Cog Assignment

COG assignment using COGNITOR (COGsoft)

http://ecoliwiki.net/colipedia/index.php/Clusters_of_Orthologous_Groups_%28COGs%29

I hope they will help.