Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Question: Targeted capture sequencing data
0
gravatar for MAPK
4.8 years ago by
MAPK • 1.7k
MAPK • 1.7k wrote:

I am working on whole genome and exome genotyping data and also need to do some analysis with the targeted genotyping data. Is there any database I can go to download these targeted capture data sets ? I have tried Illumina website, but all they have is information on targeted capture method and don't have any output data (sample data) from targeted capture.

targeted sequencing • 1.4k views
ADD COMMENT • link •
modified 4.8 years ago • written 4.8 years ago by MAPK • 1.7k
1
gravatar for rbagnall
4.8 years ago by
rbagnall • 1.7k
Australia
rbagnall • 1.7k wrote:

Do you mean you want to download fastq data from Illumina exome enrichments, and from Illumina targeted sequencing, such as the TruSight capture panels?

If you register for a BaseSpace account than you can access an assortment of different datasets:

BaseSpace Public datasets

If you want the resulting genotypes (in vcf format?) then I'm not sure.
ADD COMMENT • link written 4.8 years ago by rbagnall • 1.7k

I need the resultant genotypes in vcf format. Thanks

ADD REPLY • link written 4.8 years ago by MAPK • 1.7k

Then you can run them through BaseSpace analysis pipelines.

ADD REPLY • link written 4.8 years ago by igor ♦ 12k

@Igor Thanks, Do you know exactly which pipeline I can run in this case?

ADD REPLY • link written 4.8 years ago by MAPK • 1.7k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2701 users visited in the last hour
_