Identifying intron and exon structure for genes using RNA-seq data
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8.2 years ago
Cacau ▴ 520

I ran cufflinks to get the gtf file. How should I get the exon and intron structure of a gene based on the gtf file? I am wanting to map the exon and intron structure identified by cufflinks onto my gff annotation file of the genome.

RNA-Seq Assembly • 1.9k views
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The GTF file is the (predicted) exon/intron structure. Or do you have some only CUFF* ids and want instead more useful things like gene names and ids?

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