Question: Mouse decoy assembly
1
gravatar for russhh
2.6 years ago by
russhh4.1k
UK, U. Glasgow
russhh4.1k wrote:

Hi I typically use the 1000 genomes, decoy-containing version of GRCh38 when I'm aligning human reads. Is there an equivalent decoy-containing version of the GRCm38 / mm10 reference genome, and if there isn't, would it make sense to append the human decoys onto the mouse genome build to filter out viral sequence etc?

reference ngs mouse • 791 views
ADD COMMENTlink written 2.6 years ago by russhh4.1k

Did not know such a thing existed. Thanks :)

ADD REPLYlink written 2.6 years ago by jotan1.2k

Only the human version exists.

ADD REPLYlink written 2.6 years ago by russhh4.1k
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