I'm trying to compile AUGUSTUS on my mac (10.10.4) and I fail to compile bam2hints and filterBam executables. I get this error: g++ -Wall -O2 -c bam2hints.cc -o bam2hints.o -I/usr/include/bamtools bam2hints.cc:16:10: fatal error: 'api/BamReader.h' file not found include <api bamreader.h="">
1 error generated. make: * [bam2hints.o] Error 1 make: [all] Error 2 make: ** [all] Error 2
I have installed bamtools and I know for a fact that api/BamReader.h is there despite it saying it isn't.