I'm new to RNA-seq analysis. I'm using EdgeR to generate RPKMs.Everything works fine but the last step, there is a warning message saying that:
In y/gene.length.kb : longer object length is not a multiple of shorter object length
When I checked the RPKMs generated, the values are kinda of skewed. There are high variations even after the same conditions but the raw counts look fine.
Any idea? Thanks, Hang