Question: phytozome gtf file
0
gravatar for anjanaram1
17 months ago by
anjanaram170
United States
anjanaram170 wrote:

Hi,

I have the phytozome Maize gff3 file but when I use gffread to convert to gtf something goes wrong with the created gtf and it doesnt work properly. is there some place i could get v3 genome fasta, gff3 and gtf from? preferably not from Gramene.

plant next-gen gff assembly genome • 634 views
ADD COMMENTlink modified 10 days ago by LT10 • written 17 months ago by anjanaram170

Could you provide a link to the gff3 file ? I can maybe help you.

ADD REPLYlink written 9 days ago by Juke-341.0k
0
gravatar for LT
10 days ago by
LT10
South Africa
LT10 wrote:

Have you managed to overcome the problem you had with the gtf file created from gff3? Did it finally run successfully? I have the same problem with my sorghum gff3 file.

ADD COMMENTlink written 10 days ago by LT10

Could you provide a link to the gff3 file ? I can maybe help you.

ADD REPLYlink written 9 days ago by Juke-341.0k
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