samtools view -bS infile.sam > outfile.bam
it generated the following error :
[samopen] no @SQ lines in the header. [sam_read1] missing header? Abort!
However this -t option requires a reference fasta file. Could someone let me know from where I can get this fasta file ?
I am working with human genomic data from the Mar 2006 build. Is there one single "reference fasta" file for the human genome ? Or does this reference fasta file depend on the data that I am working on in any way ?