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• meta signature genes 'in-silico
  I am writing a project proposal for the very first time and I need all the help I can .My topic i...
• How to convert an abstract retrieved from pubmed (NCBI) into NlProt format?
  I am trying to use a text mining tool called NlProt, but for to do so i need to convert a set of ...
• In silico interstitial deletion mutations in proteins
  How can one perform interstitial deletion mutations in silico in proteins. I tried using pymol bu...
• In Silico Protein Models: How To Trust?
  I have been involved in the study of a protein family for which not much information was previous...
• RNA-Seq and no of reads
  Hello all, I have a peptide and I want to find whether this peptide has an expression in RNA-Seq ...
• antigenic peptides For mice immunization and antibody production
  Can I use a 30 aa peptide or longer for mice immunization without carrier KLH ?
• HLA typing for cancers/neoantigen identification
  In using in silico HLA typing programs such as OptiType/Polysolver/Athlates for the identificati...
• Signal Sequence in sORF-encoded peptides or micropeptides
  Hi I am exploring the sORF-encoded peptides which are less than 100 AAs long. As i read these ki...
• proteogenomics and genome annotation
  Hello all, I have done proteogenomics study to get a final list of peptide. when peptides were ma...
• How can I do mass spectra in silico
  My proteomics lab is considering a new approach for peptide tag assembler. Before doing it in wet...
• Appropriate Trimming Parameter
  Hi, I just received the raw sequence data from shotgun metagenomic sequencing. Most of them are c...
• convert DNA motif to peptide
  i have 120 DNA motifs and want to convert all of them in peptide ,how can i covert them and save...
• multiple peptide docking
  Hello everyone , i have 100 peptides and want to dock these peptide with receptor ,which tools ar...
• Question: Is there any software for finding or generating a small peptide ligand given a larger protein/receptor?
  Basically I want to input a PDB file of a protein which I suspect to have a binding site. I want ...
• About peptide design
  Hi, I am very beginner in peptide design against a specific protein. I already read some literatu...
• I Want To Add Peg (Polyethylene Glycol) Structure To My 8 Aminoacid Long Peptide Structure
  Hi, I formed 8 aminoacid long peptide structures via PyMol. I performed molecular docking. I wil...
• in silico study of enzyme-dye interaction
  An enzyme is responsible for degradation of a specific dye. Is it possible to use MD simulation t...
• IGV and proteomics
  Hello, I have a list of peptides and I am interested in visualizing their location in the genome ...