Using IGV, I am trying to upload repeat mask fasta file with extension .out or .align as well as identified peaks of chipseq TF data to see whether detected peaks are called in repeated mask regions or not. When i tried, IGV does not allow to upload repeat mask file of fasta format.
do you know how to upload repeat mask file in IGV? do i need to convert it into other format? or, IGV is not doable to take a closer look at the repeated mask regions with detected peaks? anyone who tried this on IGV before?
any inputs are appreciated!