Question: randfold-2.0.1 installation problem
0
gravatar for chipseq33
4.1 years ago by
chipseq3310
chipseq3310 wrote:

hello all,

I would like to install randfold-2.0.1 but I get this error squid.h: No such file or directory

gcc -O3 -I. -I/bin/squid-1.9g -L/bin/squid-1.9g -o randfold params.o energy_par.o fold.o fold_vars.o utils.o randfold.c -lm -lsquid 
randfold.c:25:18: fatal error: squid.h: No such file or directory
 #include<squid.h>

I checked /bin/squid-1.9g but there is no squid.h in it.

could you please help me with this ?

thanks

mirdeep2 microrna • 2.3k views
ADD COMMENTlink modified 8 months ago by h.mon30k • written 4.1 years ago by chipseq3310

You can find the squid library here. Download, configure and make. This will produce the squid.h file. Put that in library path.

ADD REPLYlink written 4.1 years ago by genomax85k

Thanks! I just did what you kindly suggested. after running "make" I got this error:

cannot find -lbam

any thought?

Thanks

ADD REPLYlink written 4.1 years ago by chipseq3310

Do you have samtools installed? That should have libbam in it.

ADD REPLYlink written 4.1 years ago by genomax85k

yes, it is installed on our server and it is in my path, too.

ADD REPLYlink written 4.1 years ago by chipseq3310

I have a problem installing randfold

I installed the squid-1.9g library, I modified the Makefile file. And I get the following error:

~/randfold-2.0$ make
gcc -O3 -I/home/bostero/squid-1.9g/ -L/home/bostero/squid-1.9g/ -o randfold params.o energy_par.o fold.o fold_vars.o utils.o randfold.c -lm -lsquid
randfold.c:25:17: fatal error: fold.h: No such file or directory
 #include<fold.h>
          ^
compilation terminated.
Makefile:7: recipe for target 'randfold' failed
make: *** [randfold] Error 1
  

I hope they can help me

best

ADD REPLYlink modified 8 months ago by h.mon30k • written 3.4 years ago by msolanodelacruz0

i am having the exact same issue...any one got the solution for this? thank you

ADD REPLYlink written 2.0 years ago by robertmukiibi20120
0
gravatar for h.mon
8 months ago by
h.mon30k
Brazil
h.mon30k wrote:

Answer here:

A: Error in installation of RandFold 2.0

ADD COMMENTlink written 8 months ago by h.mon30k
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