Question: VCF - Annotation
0
gravatar for manojkumarbioinfo
2.8 years ago by
India
manojkumarbioinfo30 wrote:

Hi,

I would like to annotate my vcf file.I have mapped my Raw data of Pseudomonas_aeruginosa using BWA and their variant were called using samtools mpileup. now i wish to annotate my vcf file to find out whether any one of my variants found in the coding reagion. i tried different tools for annotation but many dont have the data base regrinding Pseudomonas_aeruginosa for annotation purpose. if any one have any idea for annotating the vcf file kindly help me

sequencing ngs annotation vcf • 1.1k views
ADD COMMENTlink modified 2.8 years ago by Emily_Ensembl17k • written 2.8 years ago by manojkumarbioinfo30
1
gravatar for Emily_Ensembl
2.8 years ago by
Emily_Ensembl17k
EMBL-EBI
Emily_Ensembl17k wrote:

Have you tried the Ensembl VEP?

ADD COMMENTlink written 2.8 years ago by Emily_Ensembl17k

@Emily Thank you for your help :)

ADD REPLYlink written 2.8 years ago by manojkumarbioinfo30
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