I have two genomes from same non-model organism generated at different times. The version 1 has ~
43000 scaffolds while the version2 has ~
15000 scaffolds. The N50 score for version was
40000 while the N50 score the recent version was
78000. Is there any other way to check the which Genome(version1 or version 2) is better ? Is there any bioinformatics tool to evaluate the features like AT richness, repetitive transcripts ina genome?
Also I am unable to understand the concept behind the N50 measure score. It would be great if someone explain
Kindly guide me.