Currently, I want to make a list of Transcription factor-target gene pair. From this ensembl regulatory database I got the location of regulation region. From several databases, I also get a list of transcription factor genes,name of the genes and ensembl ID. My question right now is, how can I pair these 2 informations? I want to predict a transcription factor and its TFBS. If you have any suggestion how to predict a transcription factor gene (given the name/id) binds to a promoter region of a gene, please share with me. The output should be, a pair of TF gene and target gene, and coordinate where the TF will bind in the promoter region of the target gene.
I know about TF motifs like from JASPAR, but I can not download them. It is images. This is so confusing for me. Why would they provide an image? Is there any way to get this in a text file?