Question: DiscoSNP INSTALL problem
0
dahmani_amel • 20 wrote:
Hi everybody, I'm trying to install DiscoSNP following this instructions:
-get a local copy of DiscoSnp source code
git clone --recursive https://github.com/GATB/DiscoSnp.git
-compile the code an run a simple test on your computer
cd DiscoSnp
sh INSTALL
But when i try to install it by sh INSTALL, i have this :
INSTALL: 18: INSTALL: cmake: not found
make: *** Pas de cible spécifiée et aucun makefile n'a été trouvé. Arrêt.
Running simple test...
use read set: fof.txt
Running discoSnp++ 2.2.X, in directory /home/amelmek/DiscoSnp with following parameters:
read_sets=fof.txt
prefix=discoRes_k_31_c_auto
c=auto
C=2147483647
k=31
b=0
d=1
D=100
starting date=jeudi 23 juin 2016, 15:23:28 (UTC+0200)
../run_discoSnp++.sh: ligne 327: /home/amelmek/DiscoSnp/build/bin/read_file_names: Aucun fichier ou dossier de ce type
############################################################
#################### GRAPH CREATION #######################
############################################################
/home/amelmek/DiscoSnp/build/ext/gatb-core/bin/dbgh5 -in fof.txt_discoRes_k_31_c_auto_D_100_P_1_b_0_removemeplease -out discoRes_k_31_c_auto -kmer-size 31 -abundance-min auto -abundance-max 2147483647 -solidity-kind one -mphf none -verbose 0
../run_discoSnp++.sh: ligne 346: /home/amelmek/DiscoSnp/build/ext/gatb-core/bin/dbgh5: Aucun fichier ou dossier de ce type
there was a problem with graph construction
diff: discoRes_k_31_c_auto_D_100_P_1_b_0_coherent.fa: Aucun fichier ou dossier de ce type
*** Test: FAILURE on diff .fa
Can someone help me please???
Best,
Amel
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modified 4.6 years ago
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GenoMax ♦ 94k
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written
4.6 years ago by
dahmani_amel • 20
