filter VCF on VAF

Question

[guillaume.rbt]

Hi all,

This question has surely already been posted, but I have not managed to find an answer.

I wanted to know if there is a tool that can filter a VCF file based on variant allele frequency (DP alt/(DP alt + DP ref)) ?

Thanks!

Answer 1

[Medhat]

http://snpeff.sourceforge.net/SnpSift.html#filter

http://vcftools.sourceforge.net/