Question: error during installationi of KisSplice
gravatar for yoyofangliu
3.1 years ago by
yoyofangliu0 wrote:

Hello, I was trying to install KisSplice on a HPC (not a root user). After successfully running "cmake ." and typed " make install", I got this:

[ 1%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/main.cpp.o

cc1plus: error: unrecognized command line option "-std=c++11"

make[2]: * [debruijn-v4/CMakeFiles/ks_debruijn4.dir/main.cpp.o] Error 1

make[1]: * [debruijn-v4/CMakeFiles/ks_debruijn4.dir/all] Error 2

make: * [all] Error 2

Could someone tell me how to fix this? Or what favor I should ask my administrator for?

By the way, I have 9 samples of 3 conditions. Would it be less sufficient if I want to call SNPs?

Many thanks

kissplice snp rna-seq C c++ • 1.2k views
ADD COMMENTlink modified 2.8 years ago by vectorio91280 • written 3.1 years ago by yoyofangliu0

What version of g++ --version are you running? You need to update g++ to v. 4.3 or better based on that error.

ADD REPLYlink written 3.1 years ago by genomax71k

Thanks for the reply

g++ --version g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-17) Copyright (C) 2010 Free Software Foundation, Inc.

Looks like it's v. 4.4

ADD REPLYlink written 3.1 years ago by yoyofangliu0


According to , GCC 4.8.1 was the first feature-complete implementation of the 2011 C++ standard. Is it possible for you to upgrade your GCC to 4.8.1 or higher?

Thanks for the report.

ADD REPLYlink written 3.1 years ago by leandro.ishi.lima90

Hello yoyofangliu,

Were you eventually able to make KisSplice run? We still wait your response.


ADD REPLYlink written 3.0 years ago by leandro.ishi.lima90

Which version of KisSplice did you try to install ? Do not trust KisSplice 2.4.0-p1 I failed to install it on CentOS 6.7 as it throws the same error you had, even when I upgraded GCC to GCC 4.8.2. However, KisSplice 2.4.0 installed with no problem at all.

ADD REPLYlink written 2.8 years ago by vectorio91280
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