Question: error during installationi of KisSplice
0
gravatar for yoyofangliu
7 months ago by
yoyofangliu0 wrote:

Hello, I was trying to install KisSplice on a HPC (not a root user). After successfully running "cmake ." and typed " make install", I got this:

[ 1%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/main.cpp.o

cc1plus: error: unrecognized command line option "-std=c++11"

make[2]: * [debruijn-v4/CMakeFiles/ks_debruijn4.dir/main.cpp.o] Error 1

make[1]: * [debruijn-v4/CMakeFiles/ks_debruijn4.dir/all] Error 2

make: * [all] Error 2

Could someone tell me how to fix this? Or what favor I should ask my administrator for?

By the way, I have 9 samples of 3 conditions. Would it be less sufficient if I want to call SNPs?

Many thanks

kissplice snp rna-seq C c++ • 398 views
ADD COMMENTlink modified 3 months ago by vectorio91280 • written 7 months ago by yoyofangliu0

What version of g++ --version are you running? You need to update g++ to v. 4.3 or better based on that error.

ADD REPLYlink written 7 months ago by genomax224k

Thanks for the reply

g++ --version g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-17) Copyright (C) 2010 Free Software Foundation, Inc.

Looks like it's v. 4.4

ADD REPLYlink written 7 months ago by yoyofangliu0

Hello,

According to https://gcc.gnu.org/projects/cxx-status.html#cxx11 , GCC 4.8.1 was the first feature-complete implementation of the 2011 C++ standard. Is it possible for you to upgrade your GCC to 4.8.1 or higher?

Thanks for the report.

ADD REPLYlink written 7 months ago by leandro.ishi.lima20

Hello yoyofangliu,

Were you eventually able to make KisSplice run? We still wait your response.

Thanks.

ADD REPLYlink written 6 months ago by leandro.ishi.lima20

Which version of KisSplice did you try to install ? Do not trust KisSplice 2.4.0-p1 I failed to install it on CentOS 6.7 as it throws the same error you had, even when I upgraded GCC to GCC 4.8.2. However, KisSplice 2.4.0 installed with no problem at all.

ADD REPLYlink written 3 months ago by vectorio91280
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