Question: excluding a particular gene (coordinates) from BAm
0
gravatar for rob.costa1234
3.6 years ago by
rob.costa1234200
United States
rob.costa1234200 wrote:

I want to exclude a particular gene (or coordinates of the gene) from aligned reads in a bam file. How can I do that. The reason is for quantitation of RNA-seq I want to exclude this particular gene

bam • 634 views
ADD COMMENTlink written 3.6 years ago by rob.costa1234200
1
gravatar for genomax
3.6 years ago by
genomax78k
United States
genomax78k wrote:

Just exclude that gene from your GTF file so it is not counted. If you already have the counts then delete the count row for that gene.

ADD COMMENTlink written 3.6 years ago by genomax78k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1417 users visited in the last hour