Question: removing chloroplast sequence from FASTQ files
0
gravatar for Ric
3.1 years ago by
Ric280
Australia
Ric280 wrote:

Hi, I have paired-end WGS FASTQ files and chloroplast genome. How is it possible to remove chloroplast sequences from the FASTQ files?

Thank you in advance.

Mic

fastq assembly • 1.3k views
ADD COMMENTlink written 3.1 years ago by Ric280
1
gravatar for genomax
3.1 years ago by
genomax71k
United States
genomax71k wrote:

Use BBSplit from BBMap to bin the reads (chloro and non-chloro) as noted here: BBSplit syntax for generating builds for the reference genome and how to call different builds.

ADD COMMENTlink modified 3.1 years ago • written 3.1 years ago by genomax71k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1309 users visited in the last hour