How to use SNPEff software for comparison of a set of 100 VCF files?
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7.7 years ago

How to use SNPEff software for comparison of a set of 100 VCF files? Is there any example or a recipe?
SNP vcf • 2.3k views
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Have you considered the manual? http://snpeff.sourceforge.net/SnpEff_manual.html

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I think you should have a look on SnpSift not SNPEff also away from Snp...
have a look at http://varianttools.sourceforge.net/ specially http://varianttools.sourceforge.net/Vtools/Compare

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thank you................................................

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