Question: MicroArray Filtering Process/Software?
0
gravatar for Stefan
4.4 years ago by
Stefan0
Stefan0 wrote:

Hi Guys,

My PI asked me to filter out some datasets he has from a micro array. He showed me to download cel files from the GEO database and thats about it. He explained to me that the datasets need to filtered by background adjustment, quantile normalization, median polish probeset summarization. Is there a program or software that can be able to achieve the results needed?

Thanks

ADD COMMENTlink modified 2.3 years ago by Biostar ♦♦ 20 • written 4.4 years ago by Stefan0

You may also want to look into GEO2R.

ADD REPLYlink written 4.4 years ago by GenoMax95k

What platform array data is that? I mean Agilent / Affymetrix or something else?

ADD REPLYlink written 2.3 years ago by lakhujanivijay5.4k
2
gravatar for keith.hughitt
4.4 years ago by
keith.hughitt280
United States
keith.hughitt280 wrote:

You might want to start by checking out the Bioconductor microarray analysis guide: https://www.bioconductor.org/help/workflows/arrays/

ADD COMMENTlink written 4.4 years ago by keith.hughitt280
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