Question: SnpEff html and .vcf file result are not matching
1
gravatar for Sudhir Jadhao
2.6 years ago by
India
Sudhir Jadhao60 wrote:

Dear All,

I have successfully managed to run SnpEff for my vcf files. However, the count of missense variants in my html file and the VCF file generated by SnpEff are different.

Missense in HTML: 205,104 Missense in VCF fle: 190,605

Can any one please suggest me about the criteria for missense calculation in html file, so that I could match the vcf file with the missense file.

My SnpEff version is: 4.1 Genome used: rice7 Command Line: snpEff ann -V rice7 [input_file]

snp • 904 views
ADD COMMENTlink written 2.6 years ago by Sudhir Jadhao60

Hy i am also have same problem, can any one please suggest me about this error

ADD REPLYlink written 19 months ago by misbahabas60

Hy i am also have same problem, can any one please suggest me about this error

ADD REPLYlink written 19 months ago by misbahabas60
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