where can I find more data about --outSAMattributes All?
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7.6 years ago
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Hi,

I came across this in STAR aligner: --outSAMattributes All the manual says it includes: NH HI AS NM NM MD jM jI where can I find what these mean?

Thanks,

RNA-Seq rna-seq samtools STAR • 3.1k views
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4
Entering edit mode
7.6 years ago

"Sequence Alignment/Map Optional Fields Specication" http://samtools.github.io/hts-specs/SAMtags.pdf

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